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TapHi-C for profiling genome-wide chromosome conformation capture, Trends Plant Sci, 13 Sep 2023

Updated: 2023-09-13

Trends in Plant Science, 13 September, 2023, DOI:https://doi.org/10.1016/j.tplants.2023.06.009


TapHi-C for profiling genome-wide chromosome conformation capture

Haiyan Yue, Aixuan Li, Yiheng Tang, Runsheng Chen



Chromosomes are highly packed in the cell nucleus, with each chromosome occupying a specific nuclear territory. High throughput chromosome conformation capture (Hi-C) has been used to reveal hierarchical chromatin architectures (i.e., compartments, topologically associating domains, and chromatin loops), but requires large amount of tissue and deep sequencing coverage and is only able to provide a limited resolution in plants. However, accessing high-resolution interaction information is critical for better disclosure of chromosomal architecture spatial configuration changes under various stresses in plants.


Article link:https://www.sciencedirect.com/science/article/pii/S1360138523002005?via%3Dihub



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